Wednesday, March 12, 2025

Harmonizing and Pooling Datasets for Well being Analysis in R | by Rodrigo M Carrillo Larco, MD, PhD | Jan, 2025


R code to extract information from distinctive datasets and mix them in a single harmonized dataset prepared for seamless evaluation

Photograph by Claudio Schwarz on Unsplash

My educational analysis overwhelmingly contains figuring out datasets for well being analysis, harmonizing them, and mixing (pooling) the person datasets to investigate them collectively. This implies combining datasets throughout populations, examine websites, or nations. It additionally means combining variables in order that they are often successfully analyzed collectively. In different phrases, I work within the information pooling area the place I’ve been full time since 2017.

I’ll define the methodology I observe to extract information from particular person datasets, and to mix the person datasets into one pooled dataset prepared for evaluation. That is based mostly on over seven years of expertise working in educational environments globally. This story contains code in R.

Information pooling — what’s it?

In most settings we’ll accumulate new information (major information assortment) or work with just one dataset that’s already out there for evaluation. This one dataset might be from one hospital, a particular inhabitants (e.g., epidemiological examine performed in a neighborhood), or a well being survey performed all through a rustic (i.e., nationally consultant well being survey…

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